Function reference • tidypaleo

Stratigraphic diagrams Helpers for ggplot2-based stratigraphic diagrams.
`geom_col_segsh()` `geom_col_segs()` `GeomColSegsh` `GeomColSegs` `GeomLineh`	Useful geometries for strat diagrams
`geom_lineh()`	Connect observations in the vertical direction
`geom_point_exaggerate()` `geom_line_exaggerate()` `geom_lineh_exaggerate()` `geom_area_exaggerate()` `geom_areah_exaggerate()`	Exaggerated geometries that do not train scales
`geom_ribbonh()` `GeomRibbonh` `geom_areah()` `GeomAreah`	Vertical ribbons and area plots
`stat_nested_hclust()` `StatNestedHclust`	Display a dendrogram as a ggplot2 layer
`scale_x_abundance()` `scale_y_abundance()`	Scales for relative abundance values
`scale_y_depth_age()` `scale_y_age_depth()` `scale_x_depth_age()` `scale_x_age_depth()`	Age-depth scales
`facet_abundanceh()` `facet_abundance()` `facet_geochem_wraph()` `facet_geochem_wrap()` `facet_geochem_grid()` `facet_geochem_gridh()`	Facet for relative abundance data
`layer_dendrogram()` `plot_layer_dendrogram()` `layer_zone_boundaries()`	Add a dendrogram as a layer or facet
`layer_scores()` `plot_layer_scores()`	Add scores to a plot
`rotated_facet_labels()` `rotated_axis_labels()`	Common plot modifications for stratigraphic plots
`label_geochem()`	Geochem facet labelers
`label_species()`	Species facet labellers
`theme_paleo()`	A Paleo-friendly ggplot2 theme
`sequential_layer_facets()`	Change facet ordering behaviour
Age-depth models Functions to interpolate/extrapolate ages and depths given a set of paired age/depth values.
`age_depth_model()`	Create age depth models
`predict(<age_depth_model>)` `predict_depth()` `predict_age()`	Predict age and depth values
`age_depth_as_sec_axis()`	Use an age depth model as a second ggplot axis
`age_depth_interpolate()` `age_depth_extrapolate()` `age_depth_exact()` `age_depth_na()`	Age-depth model interpolators/extrapolators
`plot(<age_depth_model>)`	Plot an age depth model using base graphics
`as_trans_factory()` `validate_trans_factory()` `validate_trans()`	Coerce and validate transforms and functions that produce them
Nested analyses Helpers for clustering and ordination of stratigraphic data.
`nested_analysis()`	Perform an analysis on a nested data matrix
`nested_data()` `unnested_data()`	Prepare a parameter-long data frame for statistical analysis
`nested_hclust()` `nested_chclust_conslink()` `nested_chclust_coniss()`	Nested (Constrained) hierarchical clustering
`nested_prcomp()`	Nested Principal Components Analysis (PCA)
`plot(<nested_analysis>)` `plot_nested_analysis()` `biplot(<nested_prcomp>)`	Plot a nested analysis
Example data Real data sets to test and document this package.
`alta_lake_210Pb_ages` `alta_lake_14C_ages` `alta_lake_bacon_ages` `alta_lake_geochem`	Alta Lake Lead-210 and Carbon-14 Ages
`halifax_lakes_plottable`	Halifax lakes water chemistry and top/bottom diatom counts
`keji_lakes_plottable`	Keji lakes core diatom counts
`long_lake_14C_ages` `long_lake_bacon_ages` `long_lake_plottable`	Long Lake Carbon-14 Ages
`kellys_lake_cladocera` `kellys_lake_geochem` `kellys_lake_ages`	Kellys Lake Data

Reference

Stratigraphic diagrams

Age-depth models

Nested analyses

Example data